rs1810636 chr20:2674279 A>C
- Sequence
gcctgacacactcaccaagcacat[A/C]gctttaaaaaaattgtttagaggc
- ASB in cell types
- PC9 (lung adenocarcinoma) pancreas GM18526 (B – cells Lymphoblastoid Cell Lines) glioblastoma cells
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.04 | 1.25 | 1.35 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP arthritis including non-rheumatoid, exceptional longevity, eye color, ldl cholesterol, longstanding arthritis, pancreatic cancer, pelvic organ prolapse, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood