rs1810999 chr1:16513981 A>G
- Sequence
ctgatgctcgctttttctcctatg[A/G]catgcaggcgacatgttacttcct
- ASB in cell types
- MM1.S (plasma cell myeloma) MCF7 (Invasive ductal breast carcinoma) TTC-1240 (Rhabdoid tumor of the kidney) RCC 7860 (Renal cell carcinoma)
- ASB for transcription factors
- MBD4_HUMAN BRD4_HUMAN ZN143_HUMAN PAX6_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MBD4_HUMAN | 2.39 | 0.36 | 2.40 | n/a | n/a | |||
| BRD4_HUMAN | 1.52 | -0.01 | 2.11 | n/a | n/a | |||
| ZN143_HUMAN | 2.67 | -4.53 | 2.00 | n/a | No Hit | |||
| PAX6_HUMAN | 2.56 | n/a | 1.00 | n/a | No Hit | |||
| BRCA2_HUMAN | 2.23 | -2.03 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood