rs1811738 chr12:63668716 T>C
- Sequence
acaccctccccagcgcctgcagcc[T/C]ccggtgcgcgcaggccccaagccc
- ASB in cell types
- RCC4 (kidney cancer cell line) LA-N-5 (Neuroblastoma. Derived from metastatic site: Bone marrow) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- HIF1A_HUMAN ZBT26_HUMAN MYCN_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HIF1A_HUMAN | 1.78 | -1.43 | 1.17 | n/a | No Hit | |||
| ZBT26_HUMAN | -0.55 | 0.55 | 1.00 | n/a | No Hit | |||
| MYCN_HUMAN | 2.59 | -2.46 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.67 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Uterus, Vagina, Whole_Blood