rs1812095 chr9:104968567 G>T
- Sequence
cggcgcgcatgcgcggctgccgga[G/T]gtgggggccgctcctcccgtgcca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) BEAS-2B (bronchial epithelium) adult erythroblasts MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- PKNX1_HUMAN GCR_HUMAN GABP1_HUMAN HCFC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | -2.91 | 2.04 | 1.50 | n/a | No Hit | |||
| GCR_HUMAN | 0.47 | 1.66 | 1.00 | n/a | No Hit | |||
| GABP1_HUMAN | -2.55 | 2.79 | 1.00 | n/a | n/a | |||
| HCFC1_HUMAN | 1.66 | n/a | 3.00 | n/a | n/a | |||
| ETV5_HUMAN | n/a | 2.84 | 1.00 | 4.59 | Concordant |
Items per page:
1 – 5 of 6
Motif analysis
