rs1812096 chr9:104968560 T>G
- Sequence
gagtaagcggcgcgcatgcgcggc[T/G]gccggaggtgggggccgctcctcc
- ASB in cell types
- adult erythroblasts BEAS-2B (bronchial epithelium) GM12878 (female B-cells lymphoblastoid cell line) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- HCFC1_HUMAN GABP1_HUMAN PKNX1_HUMAN GCR_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HCFC1_HUMAN | 2.10 | n/a | 3.00 | n/a | n/a | |||
| GABP1_HUMAN | -2.88 | 3.05 | 1.00 | n/a | n/a | |||
| PKNX1_HUMAN | -2.93 | 2.01 | 1.50 | n/a | No Hit | |||
| GCR_HUMAN | 0.56 | 1.47 | 1.00 | n/a | No Hit | |||
| BHE40_HUMAN | -2.85 | 1.83 | 1.33 | n/a | No Hit |
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Motif analysis
