rs1812397 chr19:6745127 G>A
- Sequence
aattttcctcttggctgccagccc[G/A]gactggagggaaggaaggcggccg
- ASB in cell types
- MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) MDA-MB-231 (breast adenocarcinoma) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- JUN_HUMAN CDN1B_HUMAN TF65_HUMAN GCR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.24 | 2.45 | 2.12 | n/a | No Hit | |||
| CDN1B_HUMAN | 0.17 | 1.74 | 2.12 | n/a | n/a | |||
| TF65_HUMAN | 1.56 | 1.91 | 1.56 | n/a | No Hit | |||
| GCR_HUMAN | -0.06 | 1.21 | 1.06 | n/a | No Hit | |||
| CTCF_HUMAN | 0.29 | 1.25 | 1.22 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood