rs1815548 chr1:209675255 C>T
- Sequence
gcgtgctcagcgcgtggccacctc[C/T]tgccaggtcccagccgggttccac
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ZBT26_HUMAN ZIC2_HUMAN ZN423_HUMAN PRD10_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT26_HUMAN | 2.54 | n/a | 2.00 | n/a | No Hit | |||
| ZIC2_HUMAN | 1.25 | n/a | 2.00 | -2.38 | Concordant | |||
| ZN423_HUMAN | 3.44 | n/a | 2.00 | n/a | No Hit | |||
| PRD10_HUMAN | 2.39 | n/a | 2.00 | n/a | n/a | |||
| HIC1_HUMAN | 3.46 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Sigmoid, Colon_Transverse, Heart_Left_Ventricle, Muscle_Skeletal, Pancreas, Spleen, Testis, Whole_Blood