rs1816107 chr16:76138389 T>C
- Sequence
acagatactccgagtggctgttta[T/C]agactgccccccaggaatgcattc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN GATA3_HUMAN AHR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.24 | 2.19 | 4.27 | 2.71 | Concordant | |||
| ESR1_HUMAN | 0.27 | 1.48 | 2.52 | n/a | No Hit | |||
| GATA3_HUMAN | 0.04 | 1.14 | 2.12 | n/a | No Hit | |||
| AHR_HUMAN | -0.31 | 1.93 | 2.00 | n/a | No Hit | |||
| TEAD1_HUMAN | n/a | 2.83 | 1.50 | n/a | No Hit |
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Motif analysis
