rs1817097 chr2:130181775 G>A
- Sequence
tccttagctgaatgcgcctgcgtt[G/A]tggcggcctccggcgccccaaggt
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor U87 (glioblastoma) gastrocnemius medialis
- ASB for transcription factors
- NRF1_HUMAN TYY1_HUMAN CTCF_HUMAN VEZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 1.52 | 0.26 | 1.81 | -1.50 | Weak Concordant | |||
| TYY1_HUMAN | 1.98 | 0.45 | 1.61 | 5.40 | Discordant | |||
| CTCF_HUMAN | 1.15 | 0.68 | 1.20 | 0.36 | Weak Discordant | |||
| VEZF1_HUMAN | 2.21 | -4.08 | 2.00 | n/a | No Hit | |||
| E2F1_HUMAN | 1.59 | -1.76 | 1.67 | 1.47 | Weak Discordant |
Items per page:
1 – 5 of 7
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Stomach, Testis, Thyroid, Whole_Blood