rs181766 chr16:14301021 T>C
- Sequence
gttggccaacagaggacagcaaaa[T/C]acattttttatgatcctgggaggt
- ASB in cell types
- K562 (myelogenous leukemia) GM18951 (B-cells Lymphoblastoid Cell Lines) GSC23 (Glioblastoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMC3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.33 | 1.18 | 1.45 | n/a | No Hit | |||
| STAG1_HUMAN | 0.33 | 0.76 | 1.20 | n/a | n/a | |||
| SMC3_HUMAN | 0.19 | 1.90 | 1.50 | n/a | n/a | |||
| RAD21_HUMAN | 0.38 | 1.20 | 1.44 | n/a | n/a | |||
| SMC1A_HUMAN | 0.17 | 1.26 | 1.43 | n/a | n/a |
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