rs181778593 chr11:62841551 T>G
- Sequence
aatccaactcaaacaacaagaaca[T/G]aactatttagcttgtaccctaact
- ASB in cell types
- HCT-116 (colon carcinoma) MV-4-11 (Childhood acute monocytic leukemia) TTC-1240 (Rhabdoid tumor of the kidney) HT29 (colon adenocarcinoma)
- ASB for transcription factors
- BRD4_HUMAN MED26_HUMAN CDK8_HUMAN ARID2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 2.20 | -0.08 | 2.00 | n/a | n/a | |||
| MED26_HUMAN | 2.83 | -2.52 | 1.00 | n/a | n/a | |||
| CDK8_HUMAN | 2.70 | -2.41 | 1.00 | n/a | n/a | |||
| ARID2_HUMAN | 1.65 | n/a | 2.00 | n/a | n/a | |||
| SMRC1_HUMAN | 1.69 | -0.63 | 1.20 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood