rs1818 chr8:55773665 T>C

Sequence
gcgtggcggaaatgtttctcttca[T/C]tgaggagcgggaggattgtaagat
ASB in cell types
K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) foreskin keratinocyte
ASB for transcription factors
ANDR_HUMAN GABPA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN -0.08 3.23 0.700.01 1.75 n/a No Hit
GABPA_HUMAN 2.46 -4.69 0.021.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP abnormal involuntary movement scale,  aortic valve calcium,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid,  Whole_Blood

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