rs1820412 chr4:75069870 C>T
- Sequence
ataaacatacactgcccactttct[C/T]tgcttaatgaactcttagaaggct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- NFAC3_HUMAN ZN217_HUMAN IKZF1_HUMAN COT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFAC3_HUMAN | 2.73 | -2.51 | 1.00 | n/a | No Hit | |||
| ZN217_HUMAN | 3.38 | -3.18 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 1.56 | -1.59 | 1.25 | n/a | n/a | |||
| COT1_HUMAN | 2.20 | -1.96 | 1.00 | n/a | No Hit | |||
| ARNT_HUMAN | 2.62 | -2.34 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Lung, Minor_Salivary_Gland, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg