rs1824871 chr7:95772385 T>G

Sequence
actgaggtctaagtcctaccgacg[T/G]tagagggatagacgaattgacctt
ASB in cell types
K562 (myelogenous leukemia) GM19239 (male B-cells lymphoblastoid cell line)
ASB for transcription factors
CTCF_HUMAN COT1_HUMAN ID3_HUMAN NR2C1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.32 0.46 4.4·10-51.00 1.00 n/a No Hit
COT1_HUMAN n/a 2.67 1.009.9·10-5 1.50 n/a No Hit
ID3_HUMAN n/a 2.92 1.007.1·10-3 2.00 n/a n/a
NR2C1_HUMAN n/a 1.59 1.000.01 4.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Spleen,  Thyroid

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