rs1824872 chr7:95772386 T>C

Sequence
ctgaggtctaagtcctaccgacgt[T/C]agagggatagacgaattgaccttt
ASB in cell types
K562 (myelogenous leukemia) GM19239 (male B-cells lymphoblastoid cell line)
ASB for transcription factors
CTCF_HUMAN COT1_HUMAN ID3_HUMAN NR2C1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.31 0.41 4.1·10-51.00 1.06 n/a No Hit
COT1_HUMAN n/a 2.69 1.007.5·10-5 1.50 3.24 Concordant
ID3_HUMAN n/a 2.96 1.007.1·10-3 2.00 n/a n/a
NR2C1_HUMAN n/a 1.49 1.000.02 4.00 n/a No Hit
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Motif analysis

COT1_HUMAN Concordant
COT1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Spleen,  Thyroid

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