rs182732 chr1:111133975 A>T

Sequence
ttaacttgcttgtttggttttctc[A/T]tcctcactaaactttaagttctgt
ASB in cell types
CTV-1 (Adult T acute lymphoblastic leukemia) MDM(monocyte derived macrophages)
ASB for transcription factors
SPI1_HUMAN FLI1_HUMAN ETS1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 0.45 3.32 0.937.0·10-10 1.92 4.84 Concordant
FLI1_HUMAN -2.48 2.73 1.003.7·10-3 1.00 3.60 Concordant
ETS1_HUMAN n/a 2.49 1.008.5·10-3 1.00 0.96 Weak Concordant
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Motif analysis

SPI1_HUMAN Concordant
SPI1_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Thyroid

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