rs1829308 chr1:223331769 A>G
- Sequence
ccaagccatctgctccccaaagca[A/G]ggctcaaggctgcaccccagcctg
- ASB in cell types
- HEK293 (embryonic kidney)
- ASB for transcription factors
- ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | -0.10 | 1.91 | 1.67 | 1.54 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Thyroid, Whole_Blood