rs1832666 chr3:195271242 G>A

Sequence
ggggccgggcgtgccgaaaccgct[G/A]ggtcctaggttccaagggtattag
ASB in cell types
HEK293 (embryonic kidney) breast tumor CD14+ monocytes hNSC (neural stem cells)
ASB for transcription factors
SP1_HUMAN CHD8_HUMAN RBM25_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SP1_HUMAN 1.59 0.05 2.0·10-31.00 1.11 n/a No Hit
CHD8_HUMAN 2.47 -2.17 0.021.00 1.00 n/a n/a
RBM25_HUMAN 1.28 0.01 0.051.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Minor_Salivary_Gland,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid,  Vagina

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