rs1832880 chr9:107541829 G>A
- Sequence
gggaggctggtaagatgacctcac[G/A]ggcagtttctgttgtggatttcac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) breast tumor
- ASB for transcription factors
- ESR1_HUMAN IKZF1_HUMAN IKZF2_HUMAN ATF7_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 3.87 | n/a | 2.00 | n/a | No Hit | |||
| IKZF1_HUMAN | -2.25 | 2.67 | 1.00 | n/a | n/a | |||
| IKZF2_HUMAN | -0.95 | 1.90 | 1.00 | n/a | n/a | |||
| ATF7_HUMAN | -1.63 | 2.19 | 1.00 | -0.30 | Weak Discordant |
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Motif analysis
