rs1840329 chr2:164937967 C>T

Sequence
tacctggttttgccctttggtctg[C/T]gttcctaggcctgttttgcttctt
ASB in cell types
22RV1 (prostate carcinoma) HepG2 (hepatoblastoma)
ASB for transcription factors
ANDR_HUMAN PPARG_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 3.29 n/a 8.7·10-41.00 2.00 5.91 Discordant
PPARG_HUMAN 2.71 -1.91 9.7·10-31.00 2.00 -2.07 Concordant
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Motif analysis

ANDR_HUMAN Discordant
ANDR_HUMAN pic

Genetic associations

GRASP mitral annular calcium,  parkinsons disease,  stabilized warfarin dose
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Testis,  Thyroid

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