rs1842227 chr5:154502955 A>G
- Sequence
ttggaacatatttcagccaatgac[A/G]tagccaggggaagcccatggcaag
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.58 | 0.48 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP fasting insulin, homa-b, homa-ir, late onset alzheimers disease, sporadic creutzfeldt-jakob disease