rs1843839 chr18:24010272 G>A
- Sequence
tacagctcggggtctgccttattt[G/A]gctacggtttgaacagttggctgc
- ASB for transcription factors
- MEF2B_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | -1.52 | 1.82 | 1.00 | -1.37 | Weak Discordant | |||
| IKZF1_HUMAN | 1.93 | -1.64 | 1.25 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP birth weight, fasting insulin, hdl cholesterol change with statins, homa-b, homa-ir, ldl cholesterol change with statins, total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Whole_Blood