rs1847872 chr3:71982768 G>A
- Sequence
tctgatgatggaatgctgctgtgc[G/A]tgactcactttatggctagatgtg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) BJ (fibroblasts)
- ASB for transcription factors
- ARNT_HUMAN P63_HUMAN CREB1_HUMAN E4F1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARNT_HUMAN | 1.44 | 1.23 | 2.00 | -3.55 | Concordant | |||
| P63_HUMAN | 2.51 | -2.35 | 1.00 | 3.05 | Discordant | |||
| CREB1_HUMAN | 1.24 | 0.07 | 1.70 | n/a | No Hit | |||
| E4F1_HUMAN | 1.81 | n/a | 1.00 | n/a | No Hit | |||
| RCOR1_HUMAN | 2.02 | -1.73 | 1.00 | n/a | n/a |
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Motif analysis
