rs1856196 chr9:33698349 G>A

Sequence
actctgcatttaaagggctctggt[G/A]attaggttaggccaacctgaatag
ASB in cell types
iPSC (induced pluripotent stem cells)
ASB for transcription factors
DUX4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
DUX4_HUMAN 3.32 -3.05 6.2·10-101.00 1.00 -6.25 Concordant
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Motif analysis

DUX4_HUMAN Concordant
DUX4_HUMAN pic

Genetic associations

GRASP obesity with early age of onset (age >2),  parkinsons disease,  serum creatinine
GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hypothalamus,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Pancreas,  Testis

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