rs1857843 chr4:138826615 T>C

Sequence
atatcttcaggaagaaagttgagt[T/C]ttcacaaatatttgagaaaattta
ASB in cell types
LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN -0.81 2.72 1.002.3·10-6 1.62 n/a No Hit
ANDR_HUMAN -0.61 2.55 1.000.02 1.75 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP autism,  autism with low iq,  years of education

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