rs1858707 chr8:17157076 C>A

Sequence
aactctcgggttaaggtggcgcct[C/A]cgccccgcactcgccgccgagcct
ASB in cell types
keratinocytes GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
SNAI2_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SNAI2_HUMAN -4.39 2.45 1.003.2·10-4 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Colon_Transverse,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Skin_Sun_Exposed_Lower_leg,  Testis

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