rs1859224 chr19:663485 G>A

Sequence
gcccaggccttcgtgtccctcagt[G/A]cttccctacctcatcgccgtctcc
ASB in cell types
K562 (myelogenous leukemia) CD14+ monocytes
ASB for transcription factors
NRF1_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NRF1_HUMAN -0.47 1.58 1.004.2·10-6 2.00 n/a No Hit
STAT1_HUMAN -0.80 2.71 1.001.0·10-3 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Hippocampus,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Stomach,  Testis,  Uterus,  Whole_Blood

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