rs1859788 chr7:100374211 A>G
- Sequence
tcctggagacggggccacttccac[A/G]ggcagtccttctacagcacaaggc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- MEF2B_HUMAN IKZF1_HUMAN RELB_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | 3.06 | n/a | 1.50 | n/a | No Hit | |||
| IKZF1_HUMAN | 3.62 | -3.41 | 3.50 | n/a | n/a | |||
| RELB_HUMAN | 3.23 | -2.88 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 3.15 | -2.84 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 2.89 | -3.07 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
EMBL-EBI alzheimers disease (late onset), alzheimers disease or family history of alzheimers disease, family history of alzheimers disease
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood