rs1860523 chr7:38215738 C>G

Sequence
gccttttgtaaagctttaataagt[C/G]agttctatgggaagaaaatgtgga
ASB in cell types
neural cell
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.57 0.42 0.031.00 1.29 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  fasting blood glucose,  height
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Putamen_basal_ganglia,  Lung,  Testis,  Thyroid

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