rs1861172 chr1:223109892 T>C
- Sequence
gtaagaacatgaagtgcagtacag[T/C]cacaagacaggtagtgactcattc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) A1-2 (breast cancer cells) VCaP (prostate carcinoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- FOS_HUMAN ANDR_HUMAN PRGR_HUMAN JUND_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOS_HUMAN | 3.85 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 1.09 | 0.03 | 1.75 | n/a | No Hit | |||
| PRGR_HUMAN | 2.17 | 0.07 | 1.20 | n/a | No Hit | |||
| JUND_HUMAN | 1.52 | -2.59 | 1.33 | n/a | No Hit |
Items per page:
1 – 4 of 4