rs1861220 chr19:56654251 T>A

Sequence
gcatggagaaaaagacaaggggca[T/A]gcatagtgcagggttaagggtatc
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
ATF2_HUMAN CREB1_HUMAN ATF7_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF2_HUMAN 3.55 -3.22 1.7·10-91.00 1.00 n/a No Hit
CREB1_HUMAN 1.98 -2.11 2.7·10-31.00 2.33 n/a No Hit
ATF7_HUMAN 2.55 -0.10 3.8·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  rheumatoid arthritis

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