rs1861548 chr16:11024643 G>C
- Sequence
gttcccctctggatagcggcttcc[G/C]caggcagagcctgtctctcatttg
- ASB in cell types
- HMLE-Twist-ER (breast cancer)
- ASB for transcription factors
- SMAD3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD3_HUMAN | -0.46 | 2.08 | 1.00 | 1.82 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP multiple sclerosis severity scale (continuous), multiple sclerosis severity scale (extreme), multiple sclerosis severity scale (median), total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Liver, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid