rs1862631 chr19:8050536 C>G
- Sequence
ggcggaggaactggaacagcgccc[C/G]ggcccgtgggctgccactggccgc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) GM10847 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN NFIC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.81 | -0.33 | 1.19 | n/a | No Hit | |||
| NFIC_HUMAN | n/a | 1.75 | 2.00 | 1.75 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP chronic kidney disease, fasting insulin, infant head circumference, microalbuminuria, parkinsons disease