rs1864058 chr6:39137472 A>G

Sequence
tggagctctccagggtgctgaact[A/G]tgtccatctgaatcccttttactc
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
ASB for transcription factors
RARA_HUMAN AFF1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RARA_HUMAN 2.56 -0.21 0.021.00 1.50 n/a No Hit
AFF1_HUMAN 2.85 n/a 0.051.00 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  obesity with early age of onset (age >2)
GTEx eQTL Adipose_Subcutaneous,  Whole_Blood

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