rs1864059 chr6:39137401 T>G
- Sequence
aaagcagttcagaaccctaaaggg[T/G]tcccagccagtgttactgctgagt
- ASB in cell types
- K562 (myelogenous leukemia) Ishikawa (endometrial adenocarcinoma) Jurkat (T-cells)
- ASB for transcription factors
- REST_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REST_HUMAN | 1.46 | -0.94 | 1.75 | -0.58 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP bipolar disorder, diabetic retinopathy in type 2 diabetes mellitus, hdl cholesterol, obesity with early age of onset (age >2), paternal transmission distortion, transmission distortion
GTEx eQTL Adipose_Subcutaneous, Brain_Caudate_basal_ganglia, Cells_Cultured_fibroblasts, Skin_Sun_Exposed_Lower_leg, Whole_Blood