rs1864488 chr2:73112580 G>A
- Sequence
ggagcactcctcacgccactcggg[G/A]cagccgtgcgtcttctccaccacc
- ASB in cell types
- SMMC-7721 (hepatocellular carcinoma) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- CTCF_HUMAN PTEN_HUMAN CATA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.15 | 0.32 | 1.36 | -3.72 | Concordant | |||
| PTEN_HUMAN | 2.16 | -4.00 | 1.50 | n/a | n/a | |||
| CATA_HUMAN | 1.99 | -3.62 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellum, Cells_Cultured_fibroblasts, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Whole_Blood