rs1864913 chr3:194871377 C>T
- Sequence
acacagtgtcagcgtaatcatctt[C/T]catggggacactctgttctcacat
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) VCaP (prostate carcinoma) LNCaP (prostate carcinoma) CWR22 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN HXB13_HUMAN ESR1_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.11 | 1.12 | 1.64 | n/a | No Hit | |||
| HXB13_HUMAN | -0.21 | 1.39 | 1.45 | 4.45 | Concordant | |||
| ESR1_HUMAN | -0.31 | 1.20 | 1.65 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.01 | 0.93 | 1.54 | n/a | No Hit | |||
| GCR_HUMAN | 0.47 | 1.82 | 2.07 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
