rs1865053 chr19:41308507 T>C
- Sequence
gctcagagccttgtgaaggggaga[T/C]gggcaacaaaaacaagggagggaa
- ASB in cell types
- neutrophils from periferal blood GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- RAD21_HUMAN FOXK2_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | -0.05 | 2.79 | 1.50 | n/a | n/a | |||
| FOXK2_HUMAN | 2.37 | n/a | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | 1.92 | -1.19 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Spleen, Whole_Blood