rs1865092 chr19:39445377 G>A
- Sequence
aaacggctcactaaattcaaacat[G/A]agtttcagcctggtcgccgagccg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) MDA-MB-231 (breast adenocarcinoma) A549 (lung carcinoma)
- ASB for transcription factors
- JUN_HUMAN ILF3_HUMAN CDK8_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 0.17 | 1.29 | 1.89 | n/a | No Hit | |||
| ILF3_HUMAN | -4.38 | 1.88 | 2.00 | n/a | n/a | |||
| CDK8_HUMAN | 1.27 | -0.00 | 1.40 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, ldl cholesterol change with statins, total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood