rs1865093 chr19:39445494 C>T

Sequence
ccctgcctctctcaagatggcgac[C/T]tggaagtgcgtcgcccgtgccagc
ASB in cell types
A549 (lung carcinoma) HCASMC (Human coronary artery smooth muscle cells) 22RV1 (prostate carcinoma) CD14+ monocytes
ASB for transcription factors
TCF21_HUMAN RBBP5_HUMAN ANDR_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TCF21_HUMAN 1.75 n/a 7.6·10-51.00 2.50 n/a No Hit
RBBP5_HUMAN 2.28 n/a 9.8·10-41.00 2.00 n/a n/a
ANDR_HUMAN 2.70 0.08 1.1·10-31.00 2.00 n/a No Hit
STAT1_HUMAN 2.01 n/a 1.6·10-31.00 4.00 n/a No Hit
ESR1_HUMAN 2.48 -0.40 0.021.00 2.00 -3.77 Concordant
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Motif analysis

ESR1_HUMAN Concordant
ESR1_HUMAN pic

Genetic associations

GRASP diastolic blood pressure (dbp),  eye color,  late onset alzheimers disease,  tetrology of fallot
GTEx eQTL Adipose_Visceral_Omentum,  Adrenal_Gland,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Minor_Salivary_Gland,  Muscle_Skeletal,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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