rs1865567 chr7:12211200 T>C

Sequence
tgcgtcacgcgcacgccaggggtg[T/C]ccctccgggagcgctctgcgcagg
ASB in cell types
22RV1 (prostate carcinoma) HepG2 (hepatoblastoma) breast tumor CD14+ monocytes
ASB for transcription factors
TYY1_HUMAN ANDR_HUMAN STAT1_HUMAN BRD3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN 4.16 0.16 8.1·10-71.00 1.25 n/a No Hit
ANDR_HUMAN 3.23 0.03 2.7·10-60.96 2.00 n/a No Hit
STAT1_HUMAN 1.51 -0.35 4.4·10-31.00 1.50 n/a No Hit
BRD3_HUMAN 3.01 n/a 4.6·10-31.00 2.00 n/a n/a
RBM25_HUMAN 2.27 -2.27 9.7·10-31.00 1.00 n/a n/a
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Motif analysis

MAX_HUMAN Weak Concordant
MAX_HUMAN pic

Genetic associations

GTEx eQTL Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Skin_Sun_Exposed_Lower_leg

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