rs1866477 chr12:98726055 T>G

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN -0.78 2.50 1.008.1·10-26 1.41 3.24 Concordant
SMC3_HUMAN -2.24 3.41 1.004.3·10-6 1.00 n/a n/a
REST_HUMAN n/a 3.60 1.002.8·10-4 2.00 n/a No Hit
RAD21_HUMAN -0.21 2.54 1.005.7·10-3 1.50 n/a n/a
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

GRASP parkinsons disease,  salmonella-induced pyroptosis,  suicide attempts in bipolar disorder (substance abuse/dependence),  total cholesterol
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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