rs1866863 chr6:13336583 A>G

Sequence
ttttagatacgggatactcaacct[A/G]tattgctaattccccccagatgag
ASB in cell types
K562 (myelogenous leukemia) A549 (lung carcinoma) D54 (H54, Human glioblastoma) WA01 (H1, human embryonic stem cells)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.54 0.80 1.000.04 1.35 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP asthma,  hdl cholesterol,  homa-b,  tourettes syndrome
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Brain_Putamen_basal_ganglia,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Testis,  Thyroid,  Whole_Blood

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