rs1866961 chr7:116210883 T>C
- Sequence
tgcggtgccccgggcccagggacc[T/C]ggccccctgggtagaggaggtgct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF2_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | -2.02 | 2.17 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.72 | 0.29 | 1.20 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Brain_Cortex, Cells_Cultured_fibroblasts, Lung, Nerve_Tibial, Pancreas, Testis