rs1868126 chr3:126129867 A>G

Sequence
gggtccgaactcctcctgctgagc[A/G]gctctcgtcctctgcctgttcctc
ASB in cell types
HUVEC-C (HUVEC, umbilical vein endothelial cells) esophagus squamous epithelium
ASB for transcription factors
TF65_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TF65_HUMAN 1.12 0.60 0.030.96 1.38 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  body mass index (bmi),  diabetic retinopathy in type 2 diabetes mellitus
GTEx eQTL Artery_Aorta,  Breast_Mammary_Tissue,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid

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