rs1868603 chr3:44649020 G>C

Sequence
cggctgctgcccacctggggcctg[G/C]tccgggagaggatgcacacggacc
ASB in cell types
SEM (childhood B acute lymphoblastic leukemia)
ASB for transcription factors
KMT2A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
KMT2A_HUMAN 2.42 -2.26 0.021.00 1.00 -0.07 Weak Concordant
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Motif analysis

KMT2A_HUMAN Weak Concordant
KMT2A_HUMAN pic

Genetic associations

GRASP parkinsons disease,  serum creatinine,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Breast_Mammary_Tissue,  Cells_EBV-transformed_lymphocytes,  Lung,  Muscle_Skeletal,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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