rs1868916 chr17:59367010 A>G
- Sequence
gtaaatacacgagaaaggaaagcc[A/G]ataagataaggtctgacaaatcta
- ASB in cell types
- 22RV1 (prostate carcinoma) CFPAC-1(pancreatic ductal adenocarcinoma) HEK293 (embryonic kidney) primary B-CLL cells
- ASB for transcription factors
- ANDR_HUMAN FOXA2_HUMAN ZXDB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.02 | 3.40 | 1.80 | n/a | No Hit | |||
| FOXA2_HUMAN | -0.99 | 2.36 | 1.80 | -4.87 | Discordant | |||
| ZXDB_HUMAN | -2.26 | 3.06 | 2.00 | n/a | n/a |
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Motif analysis
