rs1869264 chr2:29189257 A>G
- Sequence
tgaagagaggaaggtgattcctgt[A/G]gttttgtggtcatagttcatgtaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MS-1 (Small cell lung carcinoma) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN IKZF2_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | n/a | 3.94 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | n/a | 2.64 | 1.00 | n/a | n/a | |||
| IKZF2_HUMAN | -3.35 | 3.24 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | -4.74 | 2.76 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP ldl cholesterol change with statins, total cholesterol change with statins, years of education