rs1870009 chr3:108345748 A>G

Sequence
ccagactcaaacacaaagcatcat[A/G]cagttaaaatgccacacagtaagg
ASB in cell types
pancreas
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.58 2.19 1.002.8·10-3 1.05 n/a No Hit
Items per page:
1 – 1 of 1

Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  ldl cholesterol,  major depressive disorder,  total cholesterol,  triglycerides
GTEx eQTL Esophagus_Mucosa,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

Download