rs1870221 chr12:52203352 G>C

Sequence
agtgtgtggctggggaagcgccac[G/C]ccccagccatccagcattgcctca
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) RCC4 (kidney cancer cell line) RMG-1
ASB for transcription factors
ESR1_HUMAN FOXA1_HUMAN CEBPG_HUMAN CDK9_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 0.98 0.43 3.8·10-71.00 1.81 n/a No Hit
FOXA1_HUMAN 1.25 -0.09 2.3·10-41.00 1.71 n/a No Hit
CEBPG_HUMAN 2.95 n/a 1.8·10-31.00 2.00 n/a No Hit
CDK9_HUMAN 1.72 -1.23 0.011.00 1.00 n/a n/a
CREB1_HUMAN 1.00 0.40 0.031.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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